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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
84
ChIP-seq
66
snATAC-seq
39
total RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
184
Transcription
84
DNA binding
66
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
101
May, 2021
54
May, 2022
47
September, 2023
44
February, 2023
40
September, 2020
39
February, 2021
19
April, 2020
8
January, 2021
5
March, 2023
Available data
180
bam
180
bigWig
100
fastq
tsv
84
bed narrowPeak
84
tagAlign
73
zippedFastqFolder
1
hic
Organism
352
Homo sapiens
Biosample type
281
primary cell
67
tissue
7
cell line
2
stem cell
Organ
pancreas
148
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
172
HPAP
114
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
85
GRCh38
84
hg19
Lab
172
Klaus Kaestner, Upenn
114
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
organ_slims!
pancreas
award.project!
AMP
files.file_type!
tsv
BIOSAMPLE
ASSAY
357 results
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single cell RNA-seq
ChIP-seq
snATAC-seq
total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
monocyte
84
1
exocrine cell
39
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
+ See 14 more…
tissue
kidney
47
lung
9
10
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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