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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
14
3D chromatin structure
Date released
8
March, 2020
4
October, 2019
1
August, 2021
1
March, 2023
Available data
2022
bam
1924
bigWig
1162
bed narrowPeak
1009
tsv
593
bigBed narrowPeak
322
fastq
293
tagAlign
238
bed broadPeak
231
bed bed3+
215
bigBed broadPeak
155
txt
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
14
bedpe bed3+
14
hic
11
bed bed3
7
bed bedgraph
7
csv
3
hdf5
2
ibed
1
tagAlign bed3+
1
tar
Organism
14
Homo sapiens
Biosample type
7
tissue
4
in vitro differentiated cells
3
primary cell
Organ
pancreas
3
blood vessel
3
epithelium
3
heart
3
vasculature
liver
2
musculature of body
2
vein
1
kidney
Project
13
AMP
1
ITG
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
12
AMP-T2D consortium
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
liver
award.project!
HPAP
BIOSAMPLE
ASSAY
14 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
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