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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
17
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
84
DNA binding
8
DNA accessibility
4
Transcription
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
101
May, 2021
8
January, 2021
5
February, 2023
4
March, 2023
Available data
180
bam
180
bigWig
tsv
84
bed narrowPeak
84
tagAlign
Organism
114
Homo sapiens
Biosample type
108
primary cell
7
cell line
2
stem cell
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2445
AMP
172
HPAP
114
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
84
GRCh38
84
hg19
Lab
114
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
files.file_type!
tsv
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
tissue
thymus
1
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