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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
ChIP-seq
16
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
100
Transcription
84
DNA binding
8
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
4
March, 2023
Available data
180
bam
180
bigWig
96
tsv
84
bed narrowPeak
84
tagAlign
Organism
209
Homo sapiens
Biosample type
203
primary cell
7
cell line
2
stem cell
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
4
epithelium
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3374
AMP
209
T1D
172
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
209
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
Audit category:
5
inconsistent ontology term
organ_slims!
pancreas
bone element
BIOSAMPLE
ASSAY
213 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 30 more…
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
tissue
thymus
1
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