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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ChIP-seq
Assay category
359
DNA binding
Target of assay
295
histone
295
histone modification
162
narrow histone mark
133
broad histone mark
61
control
3
transcription factor
Date released
87
May, 2021
69
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
Available data
2184
bam
2040
bigWig
1180
bed narrowPeak
1098
tsv
603
bigBed narrowPeak
460
fastq
359
tagAlign
243
bed bed3+
243
bed broadPeak
220
bigBed broadPeak
154
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
15
bedpe bed3+
15
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
tagAlign bed3+
1
tar
Organism
359
Homo sapiens
Biosample type
222
tissue
100
primary cell
37
in vitro differentiated cells
cell line
Organ
118
brain
74
liver
22
connective tissue
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
275
AMP
84
T1D
Genome assembly (visualization)
224
GRCh38
207
hg19
Lab
275
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
pancreas
biosample_type!
cell line
BIOSAMPLE
ASSAY
359 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 41 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
See all biosamples
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