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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1418
ChIP-seq
994
total RNA-seq
337
ATAC-seq
287
single cell RNA-seq
203
DNase-seq
87
RNA microarray
73
snATAC-seq
51
pCHi-C
24
WGBS
21
Hi-C
19
RRBS
16
small RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
203
DNA accessibility
Date released
183
June, 2019
9
October, 2019
7
November, 2018
3
August, 2017
1
November, 2020
Available data
200
bam
200
bed narrowPeak
200
bigBed narrowPeak
200
bigWig
198
bed broadPeak
198
bigBed broadPeak
197
bed bed3+
8
fastq
Organism
203
Homo sapiens
Biosample type
171
tissue
31
primary cell
1
cell line
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
203
AMP
Genome assembly (visualization)
198
GRCh38
179
hg19
Lab
203
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
pancreas
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
203 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
glomerular visceral epithelial cell
1
See all biosamples
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