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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
136
total RNA-seq
42
ATAC-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
195
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
48
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
129
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
288
bam
257
bigWig
140
fastq
130
bed narrowPeak
129
tsv
37
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
4
bedpe bed3+
4
hic
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
386
Homo sapiens
Biosample type
2248
tissue
725
primary cell
564
cell line
386
in vitro differentiated cells
6
stem cell
Organ
96
connective tissue
29
embryo
24
epithelium
15
liver
pancreas
1
heart
Project
386
AMP
Genome assembly (visualization)
293
hg19
263
GRCh38
4
hg18
Lab
332
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
pancreas
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
386 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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