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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
129
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
174
DNA binding
131
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
49
broad histone mark
48
transcription factor
47
narrow histone mark
29
control
11
RNA binding protein
3
chromatin remodeller
Date released
129
May, 2021
68
August, 2017
43
December, 2017
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
251
bam
235
bigWig
141
fastq
124
tsv
105
bed narrowPeak
23
bed bed3+
17
bigBed narrowPeak
17
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
349
Homo sapiens
Biosample type
2045
tissue
738
primary cell
528
cell line
349
in vitro differentiated cells
10
stem cell
Organ
93
connective tissue
29
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
349
AMP
Genome assembly (visualization)
262
hg19
233
GRCh38
4
hg18
Lab
299
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
pancreas
month_released!
August, 2021
BIOSAMPLE
ASSAY
349 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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