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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
127
total RNA-seq
25
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
128
DNA binding
25
DNA accessibility
4
3D chromatin structure
Target of assay
74
histone
74
histone modification
38
narrow histone mark
36
broad histone mark
28
control
26
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
128
May, 2021
43
December, 2017
39
February, 2018
38
August, 2021
18
February, 2021
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
3
February, 2023
2
December, 2019
Available data
229
bam
200
bigWig
126
tsv
86
fastq
85
bed narrowPeak
23
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
294
Homo sapiens
Biosample type
1725
tissue
707
primary cell
570
cell line
294
in vitro differentiated cells
9
stem cell
Organ
connective tissue
29
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
294
AMP
Genome assembly (visualization)
222
hg19
209
GRCh38
4
hg18
Lab
244
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
pancreas
connective tissue
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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