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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
959
ChIP-seq
914
total RNA-seq
327
ATAC-seq
287
single cell RNA-seq
202
DNase-seq
87
RNA microarray
73
snATAC-seq
41
pCHi-C
23
WGBS
19
Hi-C
19
RRBS
16
small RNA-seq
3
FAIRE-seq
3
snDrop-seq
1
DNAme array
Assay category
1217
Transcription
959
DNA binding
605
DNA accessibility
43
DNA methylation
19
3D chromatin structure
Target of assay
699
histone modification
698
histone
361
narrow histone mark
337
broad histone mark
181
control
82
transcription factor
25
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
587
February, 2021
340
May, 2020
273
October, 2019
231
August, 2021
214
June, 2019
209
May, 2021
155
August, 2017
128
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
91
November, 2017
80
April, 2019
48
December, 2017
47
September, 2023
40
September, 2020
32
March, 2020
24
February, 2020
23
October, 2018
20
November, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
8
December, 2019
8
January, 2021
7
December, 2018
7
January, 2019
6
November, 2020
2
January, 2018
2
June, 2018
1
March, 2023
1
November, 2019
1
September, 2018
Available data
1893
bam
1780
bigWig
1048
bed narrowPeak
963
tsv
586
bigBed narrowPeak
322
tagAlign
315
fastq
242
bed broadPeak
219
bigBed broadPeak
215
bed bed3+
151
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
11
hic
8
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
1
tagAlign bed3+
1
tar
Organism
2972
Homo sapiens
Biosample type
2232
tissue
742
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
pancreas
586
connective tissue
490
adipose tissue
421
epithelium
375
liver
335
kidney
286
brain
286
heart
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2530
AMP
205
T1D
172
HPAP
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1785
hg19
1777
GRCh38
Lab
2313
AMP-T2D consortium
240
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
ITG
Audit category:
140
inconsistent ontology term
36
audit script error
27
inconsistent control
Audit category:
16
missing controlled_by
Audit category:
2
inconsistent assembly
2
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
2974 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
FAIRE-seq
snDrop-seq
DNAme array
tissue
adipose tissue
2
382
3
1
3
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
+ See 173 more…
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
+ See 84 more…
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