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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
42
ATAC-seq
9
pCHi-C
5
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNase-seq
Assay category
198
DNA binding
140
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
113
histone
113
histone modification
57
broad histone mark
55
narrow histone mark
48
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
129
May, 2021
68
August, 2017
46
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
12
March, 2020
8
October, 2019
5
January, 2018
5
November, 2019
2
December, 2019
2
March, 2023
1
August, 2018
Available data
291
bam
260
bigWig
145
fastq
135
tsv
132
bed narrowPeak
37
tagAlign
28
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
399
Homo sapiens
Biosample type
2232
tissue
742
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
98
connective tissue
29
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
399
AMP
2
community
Genome assembly (visualization)
298
hg19
266
GRCh38
5
hg18
Lab
345
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
116
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
401 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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