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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
750
ChIP-seq
748
total RNA-seq
198
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
198
DNA accessibility
Date released
68
February, 2023
64
August, 2021
20
May, 2022
13
October, 2019
11
May, 2023
8
February, 2021
6
July, 2019
3
October, 2017
2
August, 2017
2
January, 2018
1
November, 2019
Available data
167
bed narrowPeak
64
xls
36
bigWig
22
bam
5
bed bed3
5
fastq
3
bigBed narrowPeak
Organism
198
Homo sapiens
Biosample type
198
tissue
129
primary cell
42
in vitro differentiated cells
10
cell line
Organ
75
kidney
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
198
AMP
Genome assembly (visualization)
132
GRCh38
76
hg19
Lab
103
AMP-T2D consortium
75
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
198 results
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ATAC-seq
tissue
kidney
75
coronary artery
36
liver
20
retina
15
pigmented layer of retina
12
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