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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
677
ChIP-seq
351
total RNA-seq
192
ATAC-seq
174
single cell RNA-seq
169
DNase-seq
86
RNA microarray
23
pCHi-C
17
WGBS
17
snATAC-seq
12
Hi-C
12
small RNA-seq
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
677
DNA binding
537
Transcription
380
DNA accessibility
26
DNA methylation
12
3D chromatin structure
Target of assay
488
histone modification
487
histone
265
narrow histone mark
222
broad histone mark
134
control
55
transcription factor
10
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
238
October, 2019
226
August, 2021
193
May, 2020
159
February, 2021
158
June, 2019
113
May, 2019
82
November, 2017
80
April, 2019
80
August, 2017
76
February, 2023
61
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
30
March, 2020
22
February, 2020
19
April, 2020
18
November, 2018
17
October, 2017
14
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
1
January, 2018
Available data
1038
bam
936
bigWig
808
bed narrowPeak
489
bigBed narrowPeak
402
tsv
214
tagAlign
190
bed broadPeak
172
bed bed3+
168
bigBed broadPeak
151
txt
121
fastq
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1743
Homo sapiens
Biosample type
1744
tissue
740
primary cell
570
cell line
390
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1677
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1011
GRCh38
918
hg19
Lab
1495
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
pancreas
adipose tissue
BIOSAMPLE
ASSAY
1744 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
snDrop-seq
FAIRE-seq
tissue
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
bone tissue
58
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