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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
595
ChIP-seq
578
total RNA-seq
177
ATAC-seq
173
single cell RNA-seq
167
DNase-seq
87
RNA microarray
23
pCHi-C
19
WGBS
17
snATAC-seq
11
Hi-C
11
small RNA-seq
8
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
762
Transcription
595
DNA binding
363
DNA accessibility
27
DNA methylation
11
3D chromatin structure
Target of assay
450
histone
450
histone modification
233
narrow histone mark
217
broad histone mark
112
control
33
transcription factor
13
RNA binding protein
3
other context
3
other post-translational modification
Date released
544
February, 2021
233
October, 2019
227
August, 2021
159
June, 2019
113
May, 2019
83
August, 2017
82
November, 2017
80
April, 2019
77
February, 2023
63
July, 2019
47
September, 2023
28
March, 2020
23
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
12
November, 2018
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
2
May, 2022
1
November, 2019
Available data
1190
bam
1094
bigWig
708
bed narrowPeak
647
tsv
450
bigBed narrowPeak
190
bed broadPeak
172
bed bed3+
167
bigBed broadPeak
152
tagAlign
151
txt
81
fastq
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
7
hic
6
bedpe bed3+
5
bed bed3
5
csv
1
tagAlign bed3+
Organism
1869
Homo sapiens
Biosample type
1871
tissue
728
primary cell
376
in vitro differentiated cells
169
cell line
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1804
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1195
GRCh38
1074
hg19
Lab
1662
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
8
audit script error
Audit category:
16
missing controlled_by
organ_slims!
pancreas
liver
BIOSAMPLE
ASSAY
1871 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
1
3
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
bone tissue
58
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