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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
60
ChIP-seq
Assay category
151
DNA accessibility
60
DNA binding
Target of assay
49
histone
49
histone modification
29
broad histone mark
20
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
80
August, 2021
65
February, 2023
30
May, 2021
20
May, 2022
14
August, 2017
1
April, 2019
1
November, 2017
Available data
bam
2506
bigWig
1563
bed narrowPeak
1183
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
211
Homo sapiens
Biosample type
163
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
36
heart
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
211
AMP
Genome assembly (visualization)
112
hg19
99
GRCh38
Lab
79
AMP-T2D consortium
64
Katalin Susztak, Upenn
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
files.file_type!
bam
BIOSAMPLE
ASSAY
211 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
liver
20
retina
15
skeletal muscle tissue
13
+ See 5 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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