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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
total RNA-seq
152
ChIP-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
281
Transcription
187
DNA accessibility
152
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
132
histone
132
histone modification
74
broad histone mark
58
narrow histone mark
23
control
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
31
July, 2019
21
October, 2019
11
July, 2018
10
April, 2018
8
January, 2021
8
June, 2019
5
December, 2019
5
November, 2020
4
August, 2021
3
November, 2017
2
August, 2017
2
June, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
421
bigWig
415
bam
227
bed narrowPeak
162
tsv
151
fastq
100
tagAlign
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
655
Homo sapiens
Biosample type
1733
tissue
655
primary cell
374
in vitro differentiated cells
222
cell line
10
stem cell
Organ
345
epithelium
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
278
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
363
hg19
261
GRCh38
Lab
243
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
28
audit script error
26
inconsistent ontology term
organ_slims!
pancreas
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
655 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
4
33
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
22
1
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