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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
607
ChIP-seq
193
ATAC-seq
174
single cell RNA-seq
164
DNase-seq
87
RNA microarray
24
pCHi-C
17
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
6
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
607
DNA binding
376
DNA accessibility
23
DNA methylation
12
3D chromatin structure
Target of assay
488
histone
488
histone modification
266
narrow histone mark
222
broad histone mark
109
control
10
transcription factor
8
RNA binding protein
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
113
May, 2019
89
August, 2017
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
47
September, 2023
42
May, 2022
31
March, 2020
24
February, 2020
19
April, 2020
15
May, 2023
6
October, 2017
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1478
bam
1359
bigWig
821
bed narrowPeak
801
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2066
Homo sapiens
Biosample type
2068
tissue
591
primary cell
250
in vitro differentiated cells
143
cell line
6
stem cell
Organ
504
connective tissue
445
adipose tissue
299
kidney
pancreas
278
liver
273
heart
253
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2001
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1323
GRCh38
1234
hg19
Lab
1819
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
8
audit script error
organ_slims!
pancreas
files.file_type!
fastq
BIOSAMPLE
ASSAY
2068 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
liver
167
78
20
1
1
2
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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