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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
100
ChIP-seq
Assay category
197
DNA accessibility
100
DNA binding
Target of assay
51
histone
51
histone modification
49
transcription factor
26
broad histone mark
25
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
70
November, 2017
29
August, 2017
7
November, 2018
4
October, 2019
3
October, 2017
1
November, 2020
Available data
2683
bam
2491
bigWig
1550
bed narrowPeak
1183
tsv
938
bigBed narrowPeak
887
fastq
379
tagAlign
297
bed broadPeak
274
bigBed broadPeak
242
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
297
Homo sapiens
Biosample type
193
tissue
58
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
vein
3
adipose tissue
2
nerve
1
spleen
Project
297
AMP
Genome assembly (visualization)
276
hg19
266
GRCh38
Lab
297
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
pancreas
vein
BIOSAMPLE
ASSAY
297 results
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DNase-seq
ChIP-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
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