Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
77
ChIP-seq
Assay category
199
DNA accessibility
77
DNA binding
Target of assay
53
histone
53
histone modification
49
transcription factor
28
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
57
November, 2017
18
August, 2017
8
October, 2019
7
November, 2018
2
October, 2017
1
November, 2020
Available data
2365
bam
2150
bigWig
1208
bed narrowPeak
1183
tsv
825
fastq
821
bigBed narrowPeak
276
bed broadPeak
264
bigBed broadPeak
237
bed bed3+
212
tagAlign
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
vcf
Organism
276
Homo sapiens
Biosample type
182
tissue
52
cell line
41
primary cell
1
in vitro differentiated cells
Organ
78
kidney
57
liver
41
musculature of body
39
brain
36
limb
30
heart
20
epithelium
18
ureter
pancreas
15
vasculature
12
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
276
AMP
Genome assembly (visualization)
255
hg19
251
GRCh38
Lab
276
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
276 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
2
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
52
primary cell
skeletal muscle myoblast
1
8
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download