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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
1
pCHi-C
Assay category
4
3D chromatin structure
Date released
March, 2020
3
October, 2019
1
August, 2018
1
August, 2021
Available data
2693
bam
2536
bigWig
1603
bed narrowPeak
1144
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
7
hic
5
bedpe bed3+
4
hdf5
4
tar
1
tagAlign bed3+
1
vcf
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
cell line
1
tissue
Organ
pancreas
4
epithelium
1
adipose tissue
1
connective tissue
1
heart
1
liver
Project
5
AMP
Genome assembly (visualization)
4
hg19
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
pancreas
month_released!
March, 2020
BIOSAMPLE
ASSAY
5 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
tissue
heart
1
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