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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
DNase-seq
79
ChIP-seq
Assay category
192
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
64
November, 2017
15
August, 2017
8
October, 2019
November, 2018
1
November, 2020
Available data
2623
bam
2433
bigWig
1493
bed narrowPeak
1183
tsv
881
bigBed narrowPeak
806
fastq
379
tagAlign
294
bed broadPeak
271
bigBed broadPeak
237
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
7
bed bedgraph
7
csv
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
271
Homo sapiens
Biosample type
163
tissue
58
cell line
49
primary cell
1
in vitro differentiated cells
Organ
78
kidney
60
liver
36
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
pancreas
4
artery
4
eye
4
vein
2
nerve
1
adipose tissue
Project
271
AMP
Genome assembly (visualization)
253
GRCh38
250
hg19
Lab
271
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
pancreas
month_released!
November, 2018
BIOSAMPLE
ASSAY
271 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 34 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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