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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
124
total RNA-seq
46
ATAC-seq
29
DNase-seq
26
single cell RNA-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
189
DNA binding
152
Transcription
76
DNA accessibility
4
3D chromatin structure
Target of assay
172
histone
172
histone modification
91
broad histone mark
81
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
47
June, 2019
23
October, 2019
22
July, 2019
17
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
5
December, 2019
5
November, 2020
4
May, 2019
3
August, 2021
2
February, 2021
2
June, 2018
Available data
421
bigWig
415
bam
227
bed narrowPeak
162
tsv
151
fastq
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
421
Homo sapiens
Biosample type
1399
tissue
466
cell line
421
primary cell
257
in vitro differentiated cells
3
stem cell
Organ
231
epithelium
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
20
brain
15
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
241
AMP
180
T1D
Genome assembly (visualization)
414
hg19
327
GRCh38
Lab
215
Kyle Gaulton, UCSD
206
AMP-T2D consortium
Audit category:
33
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
421 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
CD8-positive, alpha-beta T cell
33
4
2
skeletal muscle myoblast
15
1
2
endothelial cell of umbilical vein
12
2
1
epithelial cell of proximal tubule
8
1
1
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