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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
14
3D chromatin structure
Date released
8
March, 2020
3
October, 2019
2
August, 2021
1
March, 2023
Available data
2683
bam
2491
bigWig
1550
bed narrowPeak
1183
tsv
938
bigBed narrowPeak
887
fastq
379
tagAlign
297
bed broadPeak
274
bigBed broadPeak
242
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
8
tissue
4
in vitro differentiated cells
1
cell line
1
primary cell
Organ
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
vein
1
kidney
Project
13
AMP
1
ITG
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
organ_slims!
pancreas
vein
BIOSAMPLE
ASSAY
14 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
primary cell
chondrocytes
1
See all biosamples
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