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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
12
ATAC-seq
Assay category
14
3D chromatin structure
12
DNA accessibility
Date released
10
February, 2023
8
March, 2020
3
October, 2019
2
August, 2021
2
February, 2021
1
March, 2023
Available data
2683
bam
2531
bigWig
1590
bed narrowPeak
1183
tsv
938
bigBed narrowPeak
887
fastq
379
tagAlign
297
bed broadPeak
274
bigBed broadPeak
242
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
26
Homo sapiens
Biosample type
13
tissue
9
in vitro differentiated cells
2
cell line
2
primary cell
Organ
pancreas
6
connective tissue
6
epithelium
4
bone element
4
skeleton
3
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
vein
1
brain
1
kidney
Project
25
AMP
1
ITG
Genome assembly (visualization)
25
hg19
3
GRCh38
Lab
23
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
organ_slims!
pancreas
vein
BIOSAMPLE
ASSAY
26 results
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Clear Filters
Hi-C
ATAC-seq
tissue
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
heart
1
+ See 7 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
1
primary cell
chondrocytes
1
osteoblast
1
See all biosamples
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