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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
2
ChIP-seq
1
FAIRE-seq
Assay category
65
DNA accessibility
2
DNA binding
Target of assay
3
transcription factor
RNA binding protein
Date released
64
August, 2021
2
November, 2017
1
October, 2019
Available data
2609
bam
2414
bigWig
1471
bed narrowPeak
1183
tsv
864
bigBed narrowPeak
806
fastq
379
tagAlign
292
bed broadPeak
269
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
67
Homo sapiens
Biosample type
64
tissue
2
cell line
1
primary cell
Organ
64
kidney
2
liver
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
67
AMP
Genome assembly (visualization)
64
GRCh38
3
hg19
Lab
64
Katalin Susztak, Upenn
3
AMP-T2D consortium
organ_slims!
pancreas
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
67 results
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ATAC-seq
ChIP-seq
FAIRE-seq
tissue
kidney
64
cell line
HepG2
2
primary cell
endothelial cell of umbilical vein
1
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