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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
16
Hi-C
Assay category
64
DNA accessibility
16
3D chromatin structure
Date released
66
August, 2021
9
March, 2020
4
October, 2019
1
March, 2023
Available data
2703
bam
2506
bigWig
1563
bed narrowPeak
1183
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
80
Homo sapiens
Biosample type
72
tissue
4
in vitro differentiated cells
3
primary cell
1
cell line
Organ
65
kidney
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
Project
79
AMP
1
ITG
Genome assembly (visualization)
65
GRCh38
15
hg19
Lab
65
Katalin Susztak, Upenn
13
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Audit category:
4
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
Hi-C
tissue
kidney
64
1
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
cell line
HepG2
1
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