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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
Assay category
13
3D chromatin structure
Date released
9
March, 2020
4
October, 2019
Available data
2523
bam
2247
bigWig
1347
bed narrowPeak
1078
tsv
951
bigBed narrowPeak
787
fastq
301
bed broadPeak
295
tagAlign
278
bigBed broadPeak
240
bed bed3+
95
txt
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
13
hic
12
bed bed3
8
csv
4
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
Organism
13
Homo sapiens
Biosample type
7
tissue
4
in vitro differentiated cells
2
primary cell
Organ
3
blood vessel
3
epithelium
3
heart
pancreas
3
vasculature
2
musculature of body
2
vein
1
liver
Project
13
AMP
Genome assembly (visualization)
13
hg19
Lab
13
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
13 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
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