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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
20
ATAC-seq
18
ChIP-seq
5
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
29
Transcription
20
DNA accessibility
18
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
40
May, 2022
34
August, 2021
Available data
34
bed narrowPeak
34
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
74
Homo sapiens
Biosample type
40
tissue
34
cell line
Organ
71
liver
pancreas
2
kidney
Project
74
AMP
Genome assembly (visualization)
35
hg19
Lab
3187
AMP-T2D consortium
292
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
ATAC-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
20
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
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