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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
94
ChIP-seq
17
pCHi-C
8
snATAC-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
103
Transcription
94
DNA binding
13
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
174
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
170
bigWig
140
bam
96
tsv
64
bed narrowPeak
44
tagAlign
2
bed bed3+
Organism
232
Homo sapiens
Biosample type
189
primary cell
37
in vitro differentiated cells
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
170
T1D
62
AMP
Genome assembly (visualization)
170
hg19
140
GRCh38
Lab
2823
AMP-T2D consortium
232
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
32
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
232 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
44
1
CD8-positive, alpha-beta T cell
4
23
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
27
5
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
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