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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
17
RRBS
13
WGBS
Assay category
64
DNA accessibility
30
DNA methylation
Date released
64
August, 2021
21
July, 2019
6
August, 2017
3
November, 2018
Available data
2673
bam
2520
bigWig
1582
bed narrowPeak
1178
tsv
930
bigBed narrowPeak
857
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
94
Homo sapiens
Biosample type
83
tissue
10
primary cell
1
cell line
Organ
68
kidney
8
heart
6
epithelium
pancreas
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
94
AMP
Genome assembly (visualization)
77
GRCh38
17
hg19
Lab
64
Katalin Susztak, Upenn
30
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
pancreas
month_released!
January, 2019
BIOSAMPLE
ASSAY
94 results
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ATAC-seq
RRBS
WGBS
tissue
kidney
64
1
heart left ventricle
1
2
adipose tissue
2
heart right ventricle
2
skeletal muscle tissue
2
+ See 8 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
HepG2
1
See all biosamples
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