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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
Hi-C
Assay category
1562
DNA binding
1427
Transcription
615
DNA accessibility
43
DNA methylation
21
3D chromatin structure
1
DNA sequencing
Date released
9
March, 2020
4
July, 2019
4
October, 2019
2
August, 2021
1
December, 2018
1
March, 2023
Available data
16
hic
13
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
1
fastq
Organism
21
Homo sapiens
Biosample type
8
tissue
7
primary cell
4
in vitro differentiated cells
2
cell line
Organ
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
20
AMP
1
ITG
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
18
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
limb
month_released!
January, 2019
BIOSAMPLE
ASSAY
21 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
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