Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
164
total RNA-seq
127
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
279
Transcription
210
DNA accessibility
185
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
158
histone
158
histone modification
83
broad histone mark
75
narrow histone mark
20
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
October, 2019
31
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
398
bigWig
384
bam
206
bed narrowPeak
160
tsv
151
fastq
100
tagAlign
74
bigBed narrowPeak
73
zippedFastqFolder
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
Organism
708
Homo sapiens
Biosample type
2014
tissue
708
primary cell
555
cell line
383
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
331
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
417
hg19
322
GRCh38
Lab
296
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
27
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
month_released!
October, 2019
award.project!
LungMap
BIOSAMPLE
ASSAY
708 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
+ See 82 more…
See all biosamples
Download