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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
13
ChIP-seq
Assay category
193
DNA accessibility
13
DNA binding
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
183
June, 2019
November, 2017
15
August, 2017
October, 2019
7
November, 2018
1
November, 2020
Available data
2075
bam
2013
bigWig
1167
tsv
1108
bed narrowPeak
576
bigBed narrowPeak
563
fastq
252
tagAlign
238
bed bed3+
223
bed broadPeak
206
bigBed broadPeak
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
13
bedpe bed3+
12
bed bed3
12
hic
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
vcf
Organism
206
Homo sapiens
Biosample type
166
tissue
39
primary cell
1
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
9
connective tissue
7
vasculature
pancreas
5
blood vessel
5
liver
4
eye
2
adipose tissue
2
artery
1
spleen
Project
206
AMP
Genome assembly (visualization)
204
GRCh38
185
hg19
Lab
206
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
pancreas
month_released!
October, 2019
November, 2017
BIOSAMPLE
ASSAY
206 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
skeletal muscle myoblast
1
13
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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