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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
726
total RNA-seq
595
ChIP-seq
185
ATAC-seq
174
single cell RNA-seq
167
DNase-seq
87
RNA microarray
23
WGBS
19
pCHi-C
17
snATAC-seq
14
small RNA-seq
11
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
914
Transcription
595
DNA binding
371
DNA accessibility
32
DNA methylation
11
3D chromatin structure
Target of assay
387
histone modification
386
histone
223
broad histone mark
163
narrow histone mark
131
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
2
January, 2018
2
May, 2021
1
November, 2019
Available data
1292
bam
1239
bigWig
793
tsv
710
bed narrowPeak
452
bigBed narrowPeak
189
bed broadPeak
174
bed bed3+
173
tagAlign
166
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
7
hic
6
bedpe bed3+
6
csv
5
bed bed3
Organism
2030
Homo sapiens
Biosample type
2032
tissue
550
cell line
469
primary cell
336
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
487
adipose tissue
pancreas
355
liver
305
heart
295
kidney
179
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1966
AMP
47
KPMP
19
LungMap
Genome assembly (visualization)
1312
GRCh38
1179
hg19
Lab
1744
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
pancreas
month_released!
October, 2019
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
2032 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
2
3
1
liver
166
140
20
1
2
3
1
1
1
1
kidney
49
23
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
4
1
1
1
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