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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
1
WGBS
Assay category
38
DNA accessibility
7
DNA binding
4
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
46
bam
44
bed narrowPeak
39
bigWig
38
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
53
Homo sapiens
Biosample type
53
tissue
Organ
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
53
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
53
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
month_released!
October, 2019
BIOSAMPLE
ASSAY
53 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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