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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
42
total RNA-seq
16
small RNA-seq
13
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
80
DNA binding
61
Transcription
25
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
17
control
6
transcription factor
4
RNA binding protein
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
157
bam
146
bigWig
72
bed narrowPeak
66
bigBed narrowPeak
61
tsv
21
bed bedMethyl
21
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
182
Homo sapiens
Biosample type
151
tissue
31
primary cell
Organ
82
heart
34
kidney
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
10
liver
10
musculature of body
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
182
AMP
Genome assembly (visualization)
150
hg19
139
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
182 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
35
2
1
4
2
kidney
23
1
1
heart right ventricle
13
2
heart
9
2
1
1
omental fat pad
4
1
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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