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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
9
WGBS
6
RRBS
1
DNase-seq
Assay category
168
DNA binding
15
DNA methylation
1
DNA accessibility
Target of assay
115
histone modification
114
histone
67
broad histone mark
46
narrow histone mark
27
control
26
transcription factor
4
RNA binding protein
2
chromatin remodeller
Date released
681
February, 2021
341
May, 2020
336
May, 2021
310
August, 2021
233
October, 2019
184
August, 2017
145
February, 2023
96
July, 2019
95
May, 2022
94
November, 2017
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
29
December, 2017
24
February, 2020
22
May, 2019
19
April, 2020
18
October, 2018
16
April, 2019
15
May, 2023
12
October, 2017
11
July, 2018
11
November, 2018
10
April, 2018
10
December, 2019
9
January, 2019
8
January, 2018
8
January, 2021
8
June, 2019
6
November, 2019
5
December, 2018
5
March, 2023
5
November, 2020
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
119
fastq
114
bam
113
bigWig
93
bed narrowPeak
69
tagAlign
29
bed broadPeak
bigBed narrowPeak
15
bigBed broadPeak
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
184
Homo sapiens
Biosample type
122
tissue
60
in vitro differentiated cells
2
primary cell
Organ
pancreas
111
connective tissue
51
adipose tissue
45
liver
26
epithelium
26
musculature of body
Project
184
AMP
Genome assembly (visualization)
78
hg19
61
GRCh38
Lab
184
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
pancreas
files.file_type!
bigBed narrowPeak
bed bed3+
BIOSAMPLE
ASSAY
184 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
tissue
liver
40
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
8
adipose tissue
1
3
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in vitro differentiated cells
adipocyte
60
primary cell
skeletal muscle myoblast
1
1
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