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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
12
WGBS
6
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
189
DNA binding
18
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
115
histone modification
114
histone
67
broad histone mark
46
narrow histone mark
39
transcription factor
35
control
4
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
683
February, 2021
341
May, 2020
338
May, 2021
315
August, 2021
233
October, 2019
198
August, 2017
149
February, 2023
100
July, 2019
96
May, 2022
94
November, 2017
50
March, 2020
47
September, 2023
44
December, 2017
40
May, 2024
40
September, 2020
39
February, 2018
24
February, 2020
22
May, 2019
19
April, 2020
18
October, 2018
16
April, 2019
15
May, 2023
12
October, 2017
11
July, 2018
11
November, 2018
10
April, 2018
10
December, 2019
9
January, 2019
8
January, 2018
8
January, 2021
8
June, 2019
6
November, 2019
5
December, 2018
5
March, 2023
5
November, 2020
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
200
fastq
194
bam
186
bigWig
163
bed narrowPeak
bigBed narrowPeak
69
tagAlign
36
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
1
csv
Organism
209
Homo sapiens
Biosample type
134
tissue
67
in vitro differentiated cells
5
cell line
3
primary cell
Organ
pancreas
122
connective tissue
55
adipose tissue
50
liver
26
epithelium
26
musculature of body
5
spleen
3
blood
3
bodily fluid
Project
209
AMP
Genome assembly (visualization)
92
hg19
78
GRCh38
Lab
209
AMP-T2D consortium
Audit category:
18
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
pancreas
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
209 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
43
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
spleen
3
2
+ See 2 more…
in vitro differentiated cells
adipocyte
67
cell line
GM12878
3
HepG2
1
1
primary cell
skeletal muscle myoblast
1
1
pancreatic cell
1
See all biosamples
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