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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
2
DNase-seq
Assay category
41
DNA binding
2
DNA accessibility
Target of assay
25
histone
25
histone modification
14
broad histone mark
14
transcription factor
11
narrow histone mark
2
RNA binding protein
2
control
1
chromatin remodeller
Date released
183
June, 2019
70
November, 2017
43
August, 2017
15
December, 2017
8
October, 2019
7
November, 2018
5
August, 2021
4
February, 2023
4
July, 2019
3
October, 2017
2
February, 2021
2
May, 2021
1
May, 2022
1
November, 2020
Available data
119
fastq
114
bam
113
bigWig
93
bed narrowPeak
69
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
43
Homo sapiens
Biosample type
21
tissue
14
primary cell
8
in vitro differentiated cells
Organ
pancreas
13
connective tissue
13
musculature of body
5
adipose tissue
3
liver
Project
43
AMP
Genome assembly (visualization)
43
hg19
27
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
organ_slims!
pancreas
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
DNase-seq
tissue
skeletal muscle tissue
13
white adipose tissue
4
liver
3
subcutaneous abdominal adipose tissue
1
primary cell
skeletal muscle myoblast
13
1
in vitro differentiated cells
adipocyte
7
1
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