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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
43
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
57
Transcription
43
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
280
October, 2019
223
August, 2017
214
June, 2019
205
May, 2021
193
August, 2021
156
February, 2021
152
May, 2020
133
February, 2023
118
May, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
47
September, 2023
41
July, 2019
40
September, 2020
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
March, 2020
8
January, 2018
8
January, 2021
6
November, 2019
5
March, 2023
2
November, 2020
1
August, 2018
1
December, 2019
1
October, 2022
1
September, 2018
Available data
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
24
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
192
Homo sapiens
Biosample type
129
tissue
35
in vitro differentiated cells
25
cell line
4
primary cell
Organ
130
kidney
26
liver
6
epithelium
5
connective tissue
pancreas
1
adipose tissue
Project
193
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
128
Katalin Susztak, Upenn
36
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
files.file_type!
tsv
BIOSAMPLE
ASSAY
193 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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