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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
519
total RNA-seq
35
ChIP-seq
22
ATAC-seq
2
pCHi-C
Assay category
519
Transcription
35
DNA binding
22
DNA accessibility
Target of assay
33
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
548
February, 2021
281
November, 2017
273
May, 2021
260
May, 2020
209
October, 2019
185
June, 2019
117
August, 2017
96
May, 2019
85
July, 2019
77
December, 2017
68
November, 2018
65
April, 2019
60
August, 2021
45
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
21
March, 2020
21
May, 2022
11
July, 2018
10
April, 2018
8
October, 2017
6
November, 2019
6
November, 2020
5
December, 2019
5
October, 2018
3
January, 2018
2
June, 2018
1
May, 2023
Available data
573
bam
555
bigWig
519
tsv
53
bed narrowPeak
30
bigBed narrowPeak
30
fastq
5
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
578
Homo sapiens
Biosample type
455
tissue
94
cell line
26
in vitro differentiated cells
3
primary cell
Organ
455
connective tissue
386
adipose tissue
66
bone element
64
artery
64
blood vessel
64
heart
64
vasculature
27
blood
27
bodily fluid
26
epithelium
pancreas
8
skeleton
6
limb
3
spleen
2
liver
Project
578
AMP
Genome assembly (visualization)
578
hg19
572
GRCh38
Lab
578
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
organ_slims!
pancreas
BIOSAMPLE
ASSAY
578 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
spleen
3
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
52
4
8
GM12878
27
HepG2
1
1
iPSC derived cell line
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
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