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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
519
total RNA-seq
84
RNA microarray
42
ChIP-seq
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
537
Transcription
49
DNA accessibility
42
DNA binding
1
3D chromatin structure
Target of assay
33
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
580
bam
555
bigWig
527
tsv
89
txt
74
fastq
53
bed narrowPeak
30
bigBed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
718
Homo sapiens
Biosample type
552
tissue
98
cell line
42
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
pancreas
27
blood
27
bodily fluid
8
kidney
8
skeleton
7
spleen
6
limb
4
liver
Project
679
AMP
39
HPAP
Genome assembly (visualization)
578
hg19
572
GRCh38
Lab
679
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
1
inconsistent control
1
inconsistent replicate
organ_slims!
pancreas
BIOSAMPLE
ASSAY
718 results
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total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
5
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
GM12878
27
HepG2
1
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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