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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
141
total RNA-seq
18
ATAC-seq
17
pCHi-C
4
DNase-seq
2
WGBS
1
DNAme array
1
single cell RNA-seq
Assay category
182
DNA binding
142
Transcription
22
DNA accessibility
3
DNA methylation
Target of assay
138
histone
138
histone modification
76
broad histone mark
62
narrow histone mark
30
transcription factor
14
control
7
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
680
February, 2021
338
May, 2021
289
October, 2019
280
August, 2021
212
June, 2019
169
August, 2017
149
February, 2023
147
May, 2020
118
May, 2019
92
July, 2019
91
November, 2017
80
April, 2019
56
May, 2022
47
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
34
December, 2018
31
December, 2017
28
November, 2018
25
January, 2019
23
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
December, 2019
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
281
bigWig
260
bam
149
bed narrowPeak
133
tsv
87
tagAlign
28
fastq
19
bigBed narrowPeak
6
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
csv
Organism
366
Homo sapiens
Biosample type
207
primary cell
129
in vitro differentiated cells
15
cell line
15
tissue
Organ
pancreas
liver
26
epithelium
15
blood
15
bodily fluid
9
spleen
3
connective tissue
3
heart
2
brain
2
embryo
1
adipose tissue
1
bone element
1
bone marrow
1
thymus
Project
214
AMP
152
T1D
Genome assembly (visualization)
292
hg19
254
GRCh38
Lab
234
Kyle Gaulton, UCSD
132
AMP-T2D consortium
Audit category:
69
inconsistent ontology term
organ_slims!
pancreas
liver
BIOSAMPLE
ASSAY
366 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
WGBS
DNAme array
single cell RNA-seq
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 12 more…
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
37
5
5
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
cell line
GM12878
15
tissue
spleen
6
1
2
brain
2
cardiac atrium
1
cardiac ventricle
1
omental fat pad
1
+ See 1 more…
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