Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
34
single cell RNA-seq
24
ChIP-seq
22
snATAC-seq
20
ATAC-seq
Assay category
69
Transcription
42
DNA accessibility
24
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
54
zippedFastqFolder
51
bigWig
39
bam
39
fastq
36
bed narrowPeak
15
tsv
1
bed bed3+
1
txt
Organism
135
Homo sapiens
Biosample type
54
primary cell
42
tissue
39
in vitro differentiated cells
Organ
pancreas
80
epithelium
40
liver
13
embryo
2
musculature of body
Project
81
AMP
54
HPAP
Genome assembly (visualization)
52
hg19
31
GRCh38
Lab
54
Klaus Kaestner, Upenn
41
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
135 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
primary cell
Langerhans cell
33
21
tissue
liver
20
20
skeletal muscle tissue
1
1
in vitro differentiated cells
pancreatic endoderm
4
9
definitive endodermal cell
2
3
embryonic stem cell
2
3
endocrine cell
2
3
posterior foregut
2
3
+ See 2 more…
See all biosamples
Download