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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
316
ChIP-seq
Assay category
316
DNA binding
Target of assay
244
transcription factor
66
recombinant protein
59
control
37
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
10
narrow histone mark
broad histone mark
2
other context
2
other post-translational modification
Date released
316
November, 2017
94
August, 2017
81
November, 2018
79
December, 2017
39
February, 2021
39
February, 2023
35
December, 2018
31
February, 2018
26
January, 2019
23
October, 2018
22
September, 2020
11
July, 2018
10
April, 2018
6
October, 2017
5
January, 2018
2
June, 2018
1
August, 2018
1
September, 2018
Available data
346
bam
316
fastq
289
bigWig
268
bed narrowPeak
267
bigBed narrowPeak
60
bed broadPeak
56
bigBed broadPeak
37
tagAlign
3
tar
Organism
316
Homo sapiens
Biosample type
307
cell line
9
primary cell
Organ
307
liver
9
brain
6
epithelium
6
vasculature
3
blood vessel
Project
316
AMP
Genome assembly (visualization)
267
hg19
216
GRCh38
Lab
316
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
15
inconsistent control read length
4
inconsistent control run_type
organ_slims!
pancreas
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
316 results
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ChIP-seq
cell line
HepG2
307
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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