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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
415
ChIP-seq
179
DNase-seq
Assay category
415
DNA binding
179
DNA accessibility
Target of assay
246
transcription factor
91
histone
91
histone modification
75
control
66
recombinant protein
50
broad histone mark
41
narrow histone mark
39
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
581
February, 2021
406
November, 2017
333
May, 2020
314
August, 2021
273
October, 2019
269
May, 2021
223
August, 2017
188
June, 2019
138
February, 2023
115
May, 2019
100
July, 2019
96
May, 2022
90
December, 2017
81
November, 2018
80
April, 2019
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
38
March, 2020
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
10
April, 2018
10
July, 2018
8
December, 2019
8
January, 2018
8
January, 2021
6
November, 2020
5
March, 2023
1
August, 2018
1
June, 2018
1
October, 2022
1
September, 2018
Available data
580
bam
518
bigWig
497
bed narrowPeak
496
bigBed narrowPeak
324
fastq
249
bed broadPeak
243
bigBed broadPeak
179
bed bed3+
78
tagAlign
3
tar
Organism
594
Homo sapiens
Biosample type
315
cell line
240
tissue
39
primary cell
Organ
317
liver
121
brain
77
kidney
34
musculature of body
31
limb
30
heart
22
epithelium
18
ureter
12
vasculature
8
blood vessel
7
eye
6
connective tissue
pancreas
2
artery
1
adipose tissue
Project
594
AMP
Genome assembly (visualization)
464
GRCh38
444
hg19
Lab
594
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
pancreas
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
594 results
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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
heart
18
muscle of arm
17
caudate nucleus
15
1
substantia nigra
15
+ See 36 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cardiac muscle cell
3
1
choroid plexus epithelial cell
3
1
retinal pigment epithelial cell
3
1
+ See 13 more…
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