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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
16
small RNA-seq
15
ChIP-seq
13
RRBS
12
WGBS
9
ATAC-seq
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
61
Transcription
25
DNA methylation
15
DNA binding
11
DNA accessibility
8
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
90
bigWig
89
bam
61
tsv
21
bed bedMethyl
21
bigBed bedMethyl
15
bed narrowPeak
14
tagAlign
12
fastq
8
bigBed narrowPeak
4
bed bed3+
4
hdf5
3
bed broadPeak
Organism
120
Homo sapiens
Biosample type
89
tissue
31
primary cell
Organ
34
brain
25
heart
19
connective tissue
13
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
11
kidney
pancreas
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
120
AMP
Genome assembly (visualization)
93
hg19
84
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
pancreas
BIOSAMPLE
ASSAY
120 results
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total RNA-seq
small RNA-seq
ChIP-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
1
heart left ventricle
2
1
4
2
omental fat pad
4
1
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 24 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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