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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
ChIP-seq
729
total RNA-seq
174
single cell RNA-seq
170
ATAC-seq
168
DNase-seq
87
RNA microarray
23
WGBS
20
pCHi-C
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
917
Transcription
748
DNA binding
357
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
518
histone modification
517
histone
275
narrow histone mark
242
broad histone mark
158
control
72
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
227
August, 2021
218
October, 2019
193
May, 2020
156
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
71
July, 2019
48
December, 2017
47
September, 2023
46
February, 2023
42
May, 2022
31
March, 2020
23
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1475
bam
1356
bigWig
796
tsv
791
bed narrowPeak
496
bigBed narrowPeak
222
tagAlign
190
bed broadPeak
175
bed bed3+
167
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2174
Homo sapiens
Biosample type
2176
tissue
737
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2109
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1430
GRCh38
1312
hg19
Lab
1927
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
pancreas
eye
BIOSAMPLE
ASSAY
2176 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
3
1
liver
145
167
1
20
2
3
1
1
1
1
kidney
27
49
64
75
13
6
1
1
1
bone element
84
heart left ventricle
35
3
18
2
3
4
1
1
1
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