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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ChIP-seq
165
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
30
DNase-seq
17
pCHi-C
9
RRBS
7
Hi-C
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
279
Transcription
216
DNA accessibility
199
DNA binding
10
DNA methylation
7
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
21
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
44
June, 2019
42
February, 2021
40
September, 2020
34
October, 2019
28
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
410
bigWig
402
bam
218
bed narrowPeak
160
tsv
151
fastq
100
tagAlign
78
bigBed narrowPeak
73
zippedFastqFolder
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
728
Homo sapiens
Biosample type
2150
tissue
728
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
351
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
431
hg19
333
GRCh38
Lab
316
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
41
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
musculature of body
BIOSAMPLE
ASSAY
728 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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