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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
16
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
84
DNA binding
8
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
100
May, 2021
8
January, 2021
5
February, 2023
Available data
84
bam
84
bed narrowPeak
84
bigWig
84
tagAlign
Organism
113
Homo sapiens
Biosample type
108
primary cell
5
cell line
Organ
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
thymus
Project
2372
AMP
113
T1D
48
HPAP
10
LungMap
1
ITG
Genome assembly (visualization)
84
GRCh38
84
hg19
Lab
113
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
thymus
assay_slims!
Transcription
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
See all biosamples
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